gtgt.Transcript

class gtgt.Transcript(rna_features: list[gtgt.bed.Bed], protein_features: list[gtgt.bed.Bed])

__init__(rna_features: list[gtgt.bed.Bed], protein_features: list[gtgt.bed.Bed])

Methods

__init__(rna_features, protein_features)
analyze(hgvs[, extended])	Analyze the transcript based on the specified HGVS description
compare(other)	Compare the size of each record in the transcripts
compare_score(other)	Compare the size of each records in the transcripts
from_description(d)	Create a Transcript object from a mutalyzer Description
intersect(selector)	Update transcript to only contain features that intersect the selector
lookup_protein_domains(d)	Lookup supported protein domains from USCS
mutate(d, variants)	Mutate the transcript based on the specified variants
overlap(selector)	Update transcript to only contain features that overlap the selector
records()	Return the Bed records that make up the Transcript
rna_records()	Return the Bed records that contain RNA features
subtract(selector)	Remove all features from transcript that intersect the selector

Attributes

coding_exons	Helper function to get the coding exons for Transcript
exons	Helper function to get the exons for Transcript