Installation

gtgt can be installed using pip:

(.venv) $ pip install gtgt

To install the requirements for gtgt webserver, you can install from pip using:

(.venv) $ pip install gtgt[webserver]

Transcript

You can fetch transcript information using the command below.

gtgt transcript ENST00000241453.12 | jq .

You can fetch links to external resources for a specified variant using the command below.

gtgt links "NM_002520.7:c.860_863dup"

To work with Bed files, gtgt comes with a Bed class that will expand to BED12.